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A model for user-oriented data provenance in pipelined scientific workflows

  • Shawn Bowers(corresponding author)
    ,
  • Timothy McPhillips
    ,
  • Bertram Ludäscher
    ,
  • Shirley Cohen
    ,
  • Susan B. Davidson
*Corresponding author for this work
  • University of California, Davis
    ,
  • University of California
    ,
  • University of Pennsylvania
Research Output:
Chapter in Book/Report/Conference proceeding
Conference contribution

Open access

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Abstract

Integrated provenance support promises to be a chief advantage of scientific workflow systems over script-based alternatives. While it is often recognized that information gathered during scientific workflow execution can be used automatically to increase fault tolerance (via checkpointing) and to optimize performance (by reusing intermediate data products in future runs), it is perhaps more significant that provenance information may also be used by scientists to reproduce results from earlier runs, to explain unexpected results, and to prepare results for publication. Current workflow systems offer little or no direct support for these "scientist-oriented" queries of provenance information. Indeed the use of advanced execution models in scientific workflows (e.g., process networks, which exhibit pipeline parallelism over streaming data) and failure to record certain fundamental events such as state resets of processes, can render existing provenance schemas useless for scientific applications of provenance. We develop a simple provenance model that is capable of supporting a wide range of scientific use cases even for complex models of computation such as process networks. Our approach reduces these use cases to database queries over event logs, and is capable of reconstructing complete data and invocation dependency graphs for a workflow run.

Bibliographic Information

Output type

Research Output:
Chapter in Book/Report/Conference proceeding
Conference contribution

Original language

English

Pages from-to (Number of pages)

Pages 133-147 (15 pages)

Publication milestones

  • Published - 2006

Publication status

Published - 2006

Publisher

Springer Verlag

Publication series

  • Publication series name: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
    ISSN (Print): 0302-9743
    ISSN (Electronic): 1611-3349
    Volume: 4145 LNCS
354046302X, 9783540463023

Publication IDs

  • Scopus: 33750071407

Host publication title

Provenance and Annotation of Data - International Provenance and Annotation Workshop, IPAW 2006, Revised Selected Papers